Bioinformatics research engineer (BAIA Unit)

Position Overview:

As  Bioinformatics Research Engineer  you will employ Bioinformatics methods, programming, data science, machine learning, AI and other IT technologies and methods to the analysis of biological sequences, with applications to scientific research on infection diseases. You will be part of the Unit for Bioinformatics and Artificial Intelligence Application (BAIA), a small and dynamic team, recently created with the mission of becoming a national and international reference center dedicated to Bioinformatics and to the applications of AI to scientific research.

This is a  local Cambodian position ; thus, the position is open only for Cambodian citizens or foreigners already currently working in Cambodia.

Recruitment conditions:

• Language:  English (very good knowledge)
• Position:  Full-time
• Contract:  The initial contract is offered for 1 year (renewable)
• Start Date:  Available to start  as soon as possible
• Remote Work:  Possibility to work remotely, subject to job role and management approval
• Benefits:
• Private health insurance including family coverage and life insurance
• NSSF (Health Care, Occupational Risk, Retirement)
• Khmer New Year, Pchum Ben and End-of-Year Bonus
• Annual leave plus an additional day every three years
• Multicultural environment with staff from different nationalities
• Opportunities for growth and career advancement

Main Responsibilities:

• Scientific data analysis
• Perform quantitative, statistical, and qualitative analyses of scientific data, with particular emphasis on DNA and RNA sequencing data generated using next-generation sequencing technologies.
• Develop and execute reproducible bioinformatics analyses using command-line tools, Python, and workflow management systems such as Nextflow.
• Analyse single-cell RNA sequencing data using established tools and pipelines, primarily in R.
• Work closely with biologists, clinicians, and other scientists to define analysis strategies, interpret results, and communicate findings.
• Contribute to the preparation of figures, reports, presentations, and scientific publications.
• Software development
• Design, implement, test, document, and maintain open-source software tools and reproducible bioinformatics pipelines.
• Adapt existing tools and workflows to the requirements of specific research projects.
• Apply good software-engineering practices, including version control, testing, code review, documentation, and reproducible environment management.
• Develop and maintain Standard Operating Procedures for the use of software tools and analytical workflows in scientific research and infectious-disease surveillance.
• Training and capacity building
• Contribute to internal training activities organized by the BAIA Unit, including courses in Linux, programming, bioinformatics, high-performance computing, and artificial intelligence.
• Participate as a tutor or co-instructor in workshops and training activities delivered at IPC or partner institutions.
• Prepare technical documentation, tutorials, practical exercises, and other training materials.

Candidate Profile:

• Qualifications & Experience
• Education:
• Master of Science (completed, recent graduates are welcome to apply), in one of the following fields:
• IT, Computer Science, Software Engineering, Data Science or a related field:
• with additional requirement:  strong affinity and interest for biological and medical sciences and research
• Biology, Pharmacology, Bioengineering, Infectiology or related field:
• with additional requirement:​​ ​ basics of Linux command line, basics of computer programming
• Skills & Competencies
• Technical Skills:
• Previous experiences with Linux command line (Bash)
• Basic knowledge of computer programming or scripting
• Knowledge or willingness to learn advanced use and programming of R and Python
• Willingness to learn advanced Bioinformatics techniques and methods
• Personal Attributes
• Strong personal affinity to technical work and computer programming
• Attention to detail and organization necessary to work in a scientific research setting
• Commitment to IPC’s mission in advancing science and public health in Cambodia.
• Problem-solving mindset and capability of interpreting complex project requirements.
• Good communication skills
• Ability to work and learn independently
• Adaptability and flexibility in working within a dynamic, multicultural, and interdisciplinary environment
• Capability of team play and willingness of effective knowledge sharing in the unit

The Institut Pasteur du Cambodge

The Institut Pasteur du Cambodge (IPC) is a Cambodian non-for-profit research institution established in 1953, IPC is today a scientific research establishment declared of public utility placed under the high patronage of the Ministry of Health of the Kingdom of Cambodia and under the responsibility of the Institute Pasteur on the scientific and technical levels. The IPC is a member of the Pasteur Network, which brings together 33 institutes present on five continents. It shares the Pasteurian values and the ethical charter to which the Pasteur Institutes are bound. The IPC has more than 300 employees, including about 30 expatriates of 10 nationalities and includes 6 research units. It carries out research activities in health biology, public health and service activities (Medical Biology Laboratory, vaccinations and water and food analyses) and training.

The Institut Pasteur du Cambodge (IPC) is seeking a motivated and qualified Bioinformatics Research Engineer within Bioinformatics and AI Applications Unit.

Why Join IPC?

The Institut Pasteur du Cambodge (IPC) is committed to fostering an inclusive, equitable, and empowering workplace. We promote transparency, non-discrimination, and professional development for all staff.

By joining IPC, you will:

• Work in an internationally collaborative and respectful environment
• Contribute meaningfully to public health and high-impact scientific research
• Access continuous learning opportunities tailored to your career path
• Be part of a team that actively supports gender equality, diversity, and inclusion
• Join an institution recognized for its integrity, innovation, and global scientific partnerships

Application

The complete application includes a cover letter – with salary expectations, copies of diplomas if any, work certificates, curriculum vitae with a recent photo, Identity Card photocopy – all certified documents to the originals – are to be sent to the Human Resources department of Institut Pasteur du Cambodge #5, Monivong Blvd, Phnom Penh or by email to:  [email protected]  phone number:  092 777 665 .