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Payroll Administrator

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Onsite

Payroll Administrator

Samaritan House

Payroll Administrator

Skills

Data AnalysisSystem & Network AdministrationProcess ImprovementComplianceRegulatory Compliance

2 months ago

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Important information


Contract type:

Permanent

Salary:

$93,600 / year

Location:

San Mateo, CA, USA

Work mode:

Onsite

Published on:

25 August 2026

What they need


Position Title: Payroll Administrator

Candidate: TBD

Department: 8010 – Admin

Supervisor: Controller

FLSA: Full-Time/Hourly/Non-Exempt

Salary Range: $45.91 / hr

Effective Date: T B D

OUR IMPACT

For over 50 years, Samaritan House has been leading the fight against poverty in San Mateo County. We’re the

only organization that delivers the full breadth of essential services and personalized support to the working poor.

By ensuring our clients are fed, clothed, healthy, and housed, we help them create their own stability and remain

an active, successful part of our community. After all, an enduring community is only possible when every person

has the resources they need to live.

OUR CULTURE
We’re passionate about providing our employees with a supportive work environment and experiences that help

them grow. We offer excellent opportunities for individuals with proven strong, creative, results-driven leadership

skills and stellar work ethics. We welcome candidates who love working with people of diverse backgrounds and

want to make a difference by fostering community care for our neighbors in need.

YOUR IMPACT
Under the general supervision of the Controller, the Payroll Administrator is responsible for the accurate and

timely processing of payroll, payroll accounting, employee benefit deductions, electronic timekeeping and

scheduling administration, labor allocation reporting, payroll compliance, and payroll-related financial reporting.

The Payroll Administrator serves as the primary administrator of the Agency's payroll, timekeeping, scheduling,

and payroll-related HRIS systems and works closely with Human Resources, Finance, and departmental leadership

to ensure accurate payroll processing, labor allocations, regulatory compliance, and employee support. This

position plays a critical role in maintaining the integrity of payroll and workforce data while supporting the

Agency's operational and financial objectives.

JOB QUALIFICATIONS
Please note our preferred and in some cases required qualifications for this position:

EDUCATION:

  • Associate's Degree in Accounting, Business Administration, Human Resources, Finance, or a related field

preferred.

  • Certified Payroll Professional (CPP) or Fundamental Payroll Certification (FPC) preferred.

EXPERIENCE:

  • 3-5 years of payroll administration experience.
  • Experience in processing multi-department payrolls and maintaining employee payroll records.
  • Experience with Paylocity or similar payroll and HRIS systems preferred.
  • Experience working with nonprofit organizations and grant-funded payroll allocations preferred.

KNOWLEDGE, SKILLS, AND ABILITIES:

  • Thorough knowledge of payroll laws, wage and hour regulations, payroll tax reporting, and benefit

deductions.

  • Strong understanding of California payroll regulations and compliance requirements.

CSAC CUG REV 2.25.2025

  • Advanced Microsoft Excel skills and proficiency with payroll reporting tools.
  • Demonstrated experience with payroll systems, HRIS platforms, and financial applications.
  • Ability to work independently while maintaining strong collaborative relationships across departments.
  • Strong attention to detail, organizational skills and ability to multitask/prioritize in a fast-paced work

environment Commitment to excellence and high standards.

  • Self-motivated; capable of developing analysis from ambiguous information with minimal or no

supervision.

  • Strong organizational, problem-solving, and analytical skills; proven ability to multi-task, manage

workflow and meet deadlines.

  • Versatility, flexibility, and a willingness to work within a dynamic environment. Creative thinker with high

energy and enthusiasm.

  • Ability to work independently and as a member of project teams.
  • Strong work ethic, customer service skills, positive and resilient attitude and integrity in all agency

business dealings and interactions.

  • Excellent, sound judgement and decision-making skills in a fast-moving environment; Ability to observe

and work within professional boundaries in all interactions with all constituents; Ability to exercise tact

and diplomacy under normal and stressful conditions.

  • Excellent interpersonal and relationship building skills. Ability to work effectively, maintain and cultivate

relationships with Agency constituents of diverse backgrounds. .

  • Flexible schedule, including ability to work early mornings, evenings, weekends and holidays when

needed.

  • Must be able to travel between agency sites or other locations as assigned. Valid California driver’s

license, dependable transportation with insurance, and a clean driving record. Ability to be on time.

PHYSICAL REQUIREMENTS AND BACKGROUND CHECK
References will be conducted prior to employment. All staff must successfully complete a criminal background

check. The position requires the physical, visual, and auditory ability to perform the essential functions of the job

with or without reasonable accommodation. Work may involve travel between agency locations and extended

periods of sitting while performing computer-based tasks. The role requires frequent use of a computer,

keyboard, and other office equipment to prepare reports, maintain records, and perform administrative work.

The position also requires occasional lifting and moving of items weighing up to approximately 20 pounds.

ESSENTIAL FUNCTIONS OF THE JOB
Payroll Administration

  1. Process bi-weekly payroll accurately and timely through the Agency's payroll system.

  2. Ensure payroll is processed in compliance with Agency policies regarding timekeeping, attendance,

overtime, meal periods, and leave administration.

  1. Review employee timesheets, pay adjustments, leave balances, and payroll entries for completeness and

accuracy.

  1. Process payroll-related employee changes including new hires, terminations, salary adjustments, benefit

deductions, status changes, and other compensation-related updates.

  1. Follow up with supervisors and employees regarding missing, inconsistent, or inaccurate timekeeping

information.

  1. Maintain payroll schedules and ensure all payroll deadlines are met.

  2. Prepare payroll import files and validate payroll data prior to processing.

  3. Review payroll registers and reconciliation reports before payroll transmission.

  4. Process off-cycle payrolls, adjustments, and special payments as needed.

  5. Serve as primary liaison with Paylocity and other payroll vendors regarding system administration and

payroll issues.

Electronic Timekeeping and Scheduling Administration
11. Serve as primary administrator for the Agency's electronic timekeeping and scheduling systems.

  1. Monitor, audit, and resolve timekeeping exceptions, missed punches, schedule discrepancies, overtime,

leave balances, and other payroll-related issues to ensure accuracy and compliance.

  1. Work closely with managers and supervisors to ensure employee schedules and time records are

maintained in accordance with Agency policies and labor regulations.

  1. Provide training and support to employees and managers regarding timekeeping and scheduling system

functionality, policies, and procedures.

CSAC CUG REV 2.25.2025

  1. Maintain employee scheduling configurations, pay codes, departmental assignments, labor distribution

structures, and organizational hierarchies within the timekeeping and scheduling systems.

  1. Generate and distribute timekeeping, attendance, overtime, and scheduling reports for management

review.

  1. Ensure timekeeping and scheduling systems are properly integrated with payroll and HRIS systems to

support accurate payroll processing.

  1. Maintain employee leave balances, including PTO, personal leave, and other applicable leave programs,

and ensure balances are accurately reflected within payroll and timekeeping systems.

  1. Identify opportunities to improve timekeeping, scheduling, and payroll workflows through process

improvements, automation, and system enhancements.

Labor Allocation and Grant Funding Support
20. Generate and review labor distribution reports for management and grant reporting purposes.

  1. Coordinate payroll allocations, labor distributions, and funding reallocations across programs,

departments, grants, and funding sources in collaboration with Finance and program leadership.

Assist with payroll-related grant reporting, funding reconciliations, and labor allocation reviews to

support compliance with grant and contract requirements.

Payroll Accounting, Reconciliations & Compliance
22. Prepare and record payroll-related journal entries in the general ledger, ensuring payroll expenses, taxes,

benefits, and liabilities are accurately recorded and reconciled.

  1. Prepare monthly benefits-related journal entries, including medical, dental, vision, retirement, life

insurance, COBRA, and other employee benefit allocations.

  1. Prepare and maintain payroll accrual, paid time off liability, and other employee compensation

schedules, including related calculations and journal entries.

  1. Coordinate with Human Resources, benefits providers, and Finance staff to ensure accurate employee

deductions and employer benefit contributions.

  1. Assist with cash forecasting by providing payroll and benefit expenditure projections.

  2. Assist with month-end and year-end closing processes related to payroll and employee benefits.

  3. Support annual audits by preparing payroll and benefits schedules and responding to auditor requests.

  4. Ensure payroll expenses, taxes, and benefit costs are accurately allocated to departments, programs,

grants, and funding sources.

  1. Prepare and distribute payroll expenditure, labor allocation, and workforce cost reports for management

and departmental review.

  1. Reconcile payroll-related accounts, including payroll liabilities, accrued payroll, payroll taxes, benefit

deductions, COBRA activity, garnishments, and other employee deductions; investigate variances and

resolve discrepancies to ensure accurate financial reporting and compliance.

  1. Assist with year-end payroll processes, including W-2 preparation, payroll audits, and regulatory

reporting.

  1. Maintain compliance with federal, state, and local payroll regulations.

  2. Monitor payroll tax filings and payments processed by payroll vendors and ensure timely resolution of

any discrepancies or notices.

  1. Respond to payroll tax inquiries, audits, and agency correspondence as needed.

  2. Prepare payroll reports and supporting documentation for audits, grant reviews, and management

requests.

  1. Maintain payroll procedures and documentation to support strong internal controls.

Benefit Administration and Reconciliation

  1. Coordinate payroll-related benefit deductions and employer contributions for medical, dental, vision,

life insurance, retirement plans, flexible spending accounts, and other employee benefit programs.

  1. Reconcile benefit invoices and employee deductions monthly.

  2. Work collaboratively with Human Resources and benefit providers to ensure accurate enrollment,

deductions, terminations, and changes.

  1. Assist employees with payroll-related benefit inquiries and resolution of deduction discrepancies.

  2. Maintain benefit-related records and support documentation for audit and compliance purposes.

  3. Support annual open enrollment and implementation of benefit plan changes as needed.

HRIS and System Administration

CSAC CUG REV 2.25.2025

  1. Maintain employee payroll records, payroll configurations, earnings codes, deduction codes, tax settings,

and organizational structures within Paylocity and related systems.

  1. Serve as system administrator for payroll, timekeeping, scheduling, and related HRIS applications.

  2. Assist with payroll system enhancements, upgrades, testing, troubleshooting, and process

improvements.

  1. Support integration between payroll, timekeeping, scheduling, benefits, HRIS, and financial systems.

  2. Develop and maintain payroll reports, dashboards, key performance indicators, and data analytics to

support management decision-making.

  1. Ensure data integrity, security, and confidentiality of employee payroll and personnel information.

  2. Identify opportunities to improve payroll efficiency, accuracy, internal controls, and automation through

system enhancements and process improvements.

  1. Maintain payroll procedures, reference materials, and system documentation.

Other Duties and Responsibilities

  1. Perform all agency work with highest of ethical standards, excellent integrity and with excellent

professional boundaries.

  1. Assist with the maintenance of a safe work environment

  2. Support, assist and attend general Agency events, activities and functions.

  3. Attend any assigned training or meetings internal or external- represent Samaritan House positively and

professionally.

  1. Provide payroll support and customer service to employees, supervisors, and department leaders.

  2. Support Controller with other duties within the Finance and Data Departments as assigned.

  3. Perform other duties as directed.

HOW TO APPLY

Interested candidates for this position will be required to submit a cover letter and resume to:

SAMARITAN HOUSE HR Manager/Recruiter

4031 Pacific Blvd. San Mateo, CA 94403

E-mail: [email protected] Via facsimile: (650) 294-4336

No phone calls, please! Samaritan House is an equal opportunity employer. Because of the volume of

applications Samaritan House receives, we regret we are not able to respond to every applicant

individually. If your skills and experience are a good match for this position, we will contact you for an

interview.

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