Frederic Bonnet

Research Engineer, Physicist, Mathematician and Computer Scientist specializing in HPC, Particle Physics, Quantum Computing, and Cryo-EM

Salaire / Taux journalier

Le Soler, France

Freelance, ouvert au CDI

Peut venir sur site

Expertises

PostgreSQLPythonJavaC#CC++MATLABLinuxWindowsAdministration système & réseauData AnalysisGitTensorFlowHTMLPHPRuby

Langues

Français (Maternelle)Anglais (Courant)

À propos

Introduction

An experienced Research Engineer with a strong background in physics, mathematics, and computer science, specializing in High-Performance Computing (HPC). Proven expertise in particle physics, quantum computing, and Cryo-EM, with a focus on algorithm development, GPU programming, and system administration for complex scientific environments. Skilled in software development, data analysis, and numerical simulation across various scientific domains.

Liens

Expérience de travail

Research Software Engineer (Particle Physics)

Swansea University

août 2024 - nov. 2025

1 an 4 mois

Swansea, Royaume-Uni

– Particle physics, Lattice Gauge theory and Lattice QCD. HPC. – Installation on the different machines within the cluster and different clusters. Tests and Benchmarks. – Non-commutative geometry. – Theoretical Physics.

Lic Pro: Administrateur de System et Reseau

Universite of Perpignan-UPVD

sept. 2023 - juil. 2024

11 mois

Perpignan, France

– System administration in both Linux and Windows systems. – Network administration, conceptualization and deployment. – Installation of software in Linux and Windows. – Database conceptualization and management and deployment. – Project management in IT systems.

HPC Consultant

EOLEN/CEA-TGCC

janv. 2023 - avr. 2023

4 mois

Bruyères-le-Châtel, France

– Product installation on the different machines within the cluster. Tests and Benchmarks. – User support on the cluster. User support on the cluster to install their software. – Software Application support at TGCC/CCRT. – Documentation of installation procedure on the cluster and amongst the team. – Delivery of training courses. – Quantum Computing.

IT/Scientific computing specialist

Leiden University

déc. 2019 - nov. 2022

3 ans

Leyde, Pays-Bas

– IT development/Management for IT infrastructure around the Cryo-EM, Cryo-ET Microscopes. – Data management for the Titan Microscopes. Software development for data handling and management. Development of software application in Linux and Windows 10 (C#). – IT procurement and evaluation of the IT requirements for and around the Krios to optimize data management and workflows. System administration, maintenance of all the servers in the infrastructure. – Development of workflows and methods for automation of data flow and computing procedures.

Yale University (New Haven)

août 2017 - juin 2019

1 an 11 mois

New Haven, Connecticut, États-Unis

Associate Research Scientist

janv. 2019 - juin 2019

6 mois

New Haven, Connecticut, États-Unis

– Algorithm development, methods in Python/ CUDA C/C++/C for resolution analysis in Cryo-EM. – Parallelisation of the ResMap application onto GPU/CPU. GPU-release of ResMap used for computation of local resolution of density maps in Cryo-EM. Achieved 5-16X speedup of application. – 3D reconstruction in Cryo-EM. Resolution analysis implementation of many different methods. – Research in image processing for cryo-EM. Algorithm development, GPU programming.

Postdoctoral Associate

août 2017 - janv. 2019

1 an 6 mois

New Haven, Connecticut, États-Unis

– Algorithm development, methods in Python/ CUDA C/C++/C for resolution analysis in Cryo-EM. – Parallelisation of the ResMap application onto GPU/CPU. GPU-release of ResMap used for computation of local resolution of density maps in Cryo-EM. Achieved 5-16X speedup of application. – 3D reconstruction in Cryo-EM. Resolution analysis implementation of many different methods. – Research in image processing for cryo-EM. Algorithm development, GPU programming.

Research Fellow

Monash University

juin 2015 - août 2017

2 ans 2 mois

Clayton Victoria 3168, Australie

– 3D reconstruction in Cryo-EM. – Parallelisation of 3D reconstruction library onto GPU/CPU hybrid clusters. Achieved 2-8X speedup. – Data processing from the Titan Microscope. Pre-processing of Cryo-EM data. – Research in image processing for cryo-EM. Algorithm development, GPU programming.

Consultant (C-Linux-Kernel-Developer)

Intitek(/Bull/IBM-Grenoble)

avr. 2013 - juil. 2013

4 mois

Échirolles, France

– Driver development on AIX Linux for coop BULL and IBM.

Research Engineer

CEA-Grenoble

déc. 2011 - févr. 2013

1 an 3 mois

Grenoble, France

– Nanowires simulation GPU programming. DSM/DRFMC/SP2M, Grenoble, France. – High performance Computing (GPU/CPU architecture), Grid Computing (GridBeans in Java), condense matter physic, nano technology. – Parallelization of the serial code onto a Hybrid architecture CPU/GPU using CUDA C. – GridBean development in JAVA in the UNICORE project. Integration of application in the UNICORE project (Grid Computing Rich Client). Development of multiple graphical interfaces using SWING, AWT classes. Development and extension of the Java packages. Restructure of package and development of algorithms to analyze and parse output files in Yaml coming from the application. Construction of classes to store the analyzed information into XML/CML files and/or into Java objects. Contributions towards the redaction of the deliverable in the MMM@HPC project, reporting of all of the technical development.

IT graduate 2010 (e-business)

DIISR-Canberra

juin 2010 - août 2010

3 mois

Canberra Territoire de la capitale australienne, Australie

– IT graduate, software development (JAVA) and network management. – Management of web services.

Postgraduate Student (PhD) / Researcher at Biomedical engineering Research Center

The University of Adelaide

déc. 2003 - août 2008

4 ans 8 mois

Adélaïde Australie-Méridionale, Australie

– Complex systems studies, financial engineering, derivatives, quantum field theory, game theory, Telecommunication, Electrical engineering. – Research in financial engineering using methods in HPC and a direct application of quantum field theory. This is done using path integrals to contribute to financial mathematics to evaluate a fair price for diverse option such as European, Exotic and American options.

Postdoctoral Research Fellow

The University of Regina

sept. 2002 - sept. 2003

1 an 1 mois

Regina, SK, Canada

– Lattice QCD, data analysis. Study of the pion form factor.


Formation

The University of Adelaide

Bachelor of Telecommunication and Finance, Electrical and Electronics Engineering

2009 - 2010

1 an 9 mois

The University of Adelaide

Doctor of Philosophy (PhD), Electrical and Electronics Engineering

2004 - 2010

6 ans

The University of Adelaide (CSSM)

Doctor of Philosophy (PhD), Theoretical and Mathematical Physics

1998 - 2001

3 ans 11 mois

University of Adelaide

Honors degree, Theoretical and mathematical physics

1997 - 1997

11 mois

University of Adelaide

Bachelor's degree, Mathematical and computer science

1993 - 1996

3 ans 3 mois

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